One ‘safe’ place with fresh food and organic egg dishes is Le Pain Quotidien. There are several in midtown Manhattan. If you like Mediterranean food, Fig and Olive is on 52nd Street between 5th and Madison
If you want to treat yourself, try ABCv (really delicious high end vegetarian) in Chelsea, or if you’re feeling adventurous, try Hangawi, excellent and healthy Korean in Koreatown. You should definitely venture out of midtown, and try Dirt Candy as well. Let me know if you would like any more info!